Naxos by Yacht and the Small Cyclades: Underrated Anchorages Worth the Detour

Few legs of a Greek charter reward patience quite like Naxos by yacht. To sail Naxos by yacht is to slow down deliberately, trading the noise of the better known islands for marble villages, fertile valleys and a scatter of low, sun bleached islets that most charters pass without a second glance. This is the green heart of the Cyclades, and the small islands just to its south are some of the calmest, clearest anchorages in the whole archipelago. They ask for a short detour. They give back a great deal.

Why Naxos by yacht rewards a slower approach

Naxos is the largest of the Cyclades and, unusually, a self sufficient one. While many islands lean entirely on the sea, Naxos grows its own potatoes, citrus and olives, raises livestock in the mountains and presses a respectable amount of cheese and wine. That matters to anyone on board who cares about what lands on the table, because the produce here is genuinely local rather than ferried in.

The town of Chora is announced from a long way off by the Portara, a vast freestanding marble doorway on the islet of Palatia, all that remains of an unfinished temple to Apollo. Anchoring off the town gives you a front row view of it at sunset, when the marble glows amber. The harbour itself can be busy and a little exposed to the swell when the wind has any north in it, so many crews prefer to take a line on the town quay early or anchor a touch further out and tender in.

Inland, if your itinerary allows a half day ashore, the mountain villages of Halki and Apeiranthos repay the drive. Apeiranthos is built almost entirely of marble, its lanes worn smooth underfoot, and it feels a world away from the waterline. This is the sort of contrast that makes Naxos worth lingering over rather than treating as a fuel stop between Mykonos and Santorini.

The Small Cyclades: a string of quiet islands

South east of Naxos lies a cluster of islands so understated they are easy to miss on a chart: Iraklia, Schinoussa, Koufonisia, Donousa and tiny Keros. Collectively they are known as the Small Cyclades, and they sit within comfortable reach of one another, none more than a couple of hours of sailing apart. For a yacht, they offer something increasingly rare in the Aegean: anchorages where you might share the bay with two or three other boats rather than thirty.

  • Koufonisia is the busiest of the group and the most rewarding for swimming. The channel between Ano and Kato Koufonisi shelters a run of pale sand beaches, and the natural rock pools along the eastern shore, at Pori and beyond, are some of the clearest water you will find anywhere in Greece.
  • Schinoussa is gentler and quieter still, with a handful of sandy coves on its southern and eastern sides that hold well in settled weather. The main hamlet sits on the ridge above Mersini harbour, a short walk up.
  • Iraklia is the wildest of the inhabited islands, with a fine anchorage at Agios Georgios and a cave walk for anyone who wants to stretch their legs ashore.
  • Donousa sits slightly apart to the north east and feels the most remote. Its sandy bays are lovely in calm conditions but more exposed to the open Aegean, so it suits a settled forecast.
  • Keros is uninhabited and protected, an important archaeological site, so it is admired from the water rather than landed on.

Rough passages and how the days link up

One of the quiet pleasures of this corner of the Cyclades is how short the hops are. From Chora on Naxos down to Koufonisia is roughly fifteen to twenty nautical miles, depending on your exact start and finish, which under sail is a relaxed half day with time to swim at the far end. Between the Small Cyclades themselves you are often looking at passages of an hour or two, the kind of distances that let you change anchorage after lunch if a bay fills up or the wind shifts.

A sensible loop might run Naxos to Schinoussa or Iraklia, on to Koufonisia for a night or two, then back up to Naxos, or onward east toward Amorgos if your charter extends that far. Amorgos, with its dramatic cliff hung monastery, makes a natural punctuation mark at the end of this chain and is well worth the longer leg in good weather.

Reading the weather: the meltemi factor

No honest account of the central Cyclades can skip the meltemi, the dry northerly wind that funnels down the Aegean through the height of summer. From roughly July into early September it can blow hard for days at a stretch, building short, steep seas and making north facing anchorages uncomfortable. The Small Cyclades sit squarely in its path.

This is not a reason to avoid the area. It is a reason to plan around it. The practical realities are straightforward:

  • Favour south and east facing bays when the meltemi is up, and keep a flexible mind about where you spend the night.
  • Late spring and early autumn, broadly May to June and September into October, tend to bring lighter, more predictable winds and far quieter anchorages.
  • Build slack into the itinerary. A fixed schedule and a strong meltemi make poor companions. A good skipper will happily shuffle the order of islands to keep you in sheltered water.

Trust your crew on this. Reading the forecast and choosing the right bay for the night is exactly the local knowledge a skipper brings, and it is the difference between a rolly night at anchor and a flat calm one a few miles away.

What to expect on board

This is a part of Greece where the simplicity of the islands and the comfort of the yacht complement each other nicely. Ashore you will find tavernas rather than fine dining, family kitchens serving what the boats brought in that morning. On board, our crews lean into that, provisioning with Naxos cheese, local citrus and the day’s catch, then anchoring somewhere quiet so dinner happens with the Portara or a darkening sea as the backdrop.

Days here are unhurried by design. Mornings tend to start with a swim straight off the stern in water clear enough to see the anchor settle. The tender earns its keep ferrying you to half hidden beaches and rock pools that have no road access at all, which is precisely why they stay empty. If you have younger guests aboard, the sheltered channel at Koufonisia and the shallow sandy bays of Schinoussa are about as benign and friendly as Aegean swimming gets.

Sensible planning notes

  • Allow at least three nights to do the Small Cyclades justice. Rushing them defeats the point.
  • Stock up properly in Naxos town. The smaller islands have shops, but choice is limited and timing is everything.
  • Keep one day in reserve as a weather buffer, especially in high summer.
  • If you want the islands at their most peaceful, aim for the shoulder months rather than the August peak.

Planning your route

Naxos and the Small Cyclades suit travellers who measure a holiday in clear water and quiet evenings rather than in places ticked off. The detour is modest, the rewards are not, and the whole chain folds neatly into a wider Cyclades itinerary or stands as a calm centrepiece in its own right.

When the time feels right, our team is glad to shape a route around the weather, the season and the pace you have in mind, matching the right yacht and crew to the islands you most want to reach. There is no hurry. The Cyclades have waited a long time, and these particular islands are in no rush to change.